hd_palettes() returns a list of palettes used by the Human Disease Blood Atlas resource of the Human Protein Atlas (HPA) project.
Details
Some of the palettes are custom palettes created for the Human Disease Blood Atlas team.
Others are taken from the ggsci package, which provides palettes inspired by scientific journals.
Examples
hd_palettes()
#> $sex_basic
#> F M
#> "#C03830" "#317EC2"
#>
#> $sex
#> F M
#> "#8a72be" "#A9D0EF"
#>
#> $diff_exp
#> not significant significant down significant up
#> "grey" "#317EC2" "#C03830"
#>
#> $cancers12
#> AML CLL LYMPH MYEL CRC LUNGC GLIOM BRC
#> "#A6CEE3" "#2271B5" "#08585A" "#66C2A5" "#B89B74" "#ADC74F" "#FFD321" "#E8A29A"
#> CVX ENDC OVC PRC
#> "#9E0142" "#B195AE" "#603479" "#E7662B"
#>
#> $secreted
#> Secreted to blood Secreted in brain
#> "#B30000" "#FFDD00"
#> Secreted to digestive system Secreted in male reproductive system
#> "#1280C4" "#95D4F5"
#> Secreted in female reproductive system Secreted to extracellular matrix
#> "#F8BDD7" "#7F6A9C"
#> Secreted in other tissues Secreted - unknown location
#> "#FFD480" "#A1A8AA"
#> Intracellular and membrane Unknown
#> "#F9A266" "grey80"
#>
#> $specificity
#> Tissue enriched Group enriched Tissue enhanced
#> "#e41a1c" "#FF9D00" "#984ea3"
#> Low tissue specificity not detected
#> "grey40" "grey"
#>
#> $class
#> Healthy Cardiovascular Metabolic Cancer Psychiatric
#> "#B3B3B3" "#FC8D62" "#E5C494" "#8DA0CB" "#66C2A5"
#> Autoimmune Infection Pediatric
#> "#E78AC3" "#FFD92F" "#A6D854"
#>
#> $nrc
#> Cinnabar Shakespeare PersianGreen Chambray Apricot
#> "#E64B35" "#4DBBD5" "#00A087" "#3C5488" "#F39B7F"
#> WildBlueYonder MonteCarlo Monza RomanCoffee Sandrift
#> "#8491B4" "#91D1C2" "#DC0000" "#7E6148" "#B09C85"
#>
#> $aaas
#> Chambray Red FunGreen HoneyFlower Teal
#> "#3B4992" "#EE0000" "#008B45" "#631879" "#008280"
#> Monza ButterflyBush FreshEggplant Stack CodGray
#> "#BB0021" "#5F559B" "#A20056" "#808180" "#1B1919"
#>
#> $nejm
#> TallPoppy DeepCerulean Zest Eucalyptus WildBlueYonder
#> "#BC3C29" "#0072B5" "#E18727" "#20854E" "#7876B1"
#> Gothic Salomie FrenchRose
#> "#6F99AD" "#FFDC91" "#EE4C97"
#>
#> $lancet
#> CongressBlue Red Apple BondiBlue TrendyPink MonaLisa
#> "#00468B" "#ED0000" "#42B540" "#0099B4" "#925E9F" "#FDAF91"
#> Carmine Edward CodGray
#> "#AD002A" "#ADB6B6" "#1B1919"
#>
#> $jama
#> Limed Spruce Anzac Cerulean Apple Blossom Acapulco
#> "#374E55" "#DF8F44" "#00A1D5" "#B24745" "#79AF97"
#> Kimberly Makara
#> "#6A6599" "#80796B"
#>
#> $bmj
#> Blue Yellow Pink Purple Orange Green Aqua Red
#> "#2A6EBB" "#F0AB00" "#C50084" "#7D5CC6" "#E37222" "#69BE28" "#00B2A9" "#CD202C"
#> Grey
#> "#747678"
#>
#> $jco
#> Lochmara Corn Gray ChestnutRose Danube RegalBlue
#> "#0073C2" "#EFC000" "#868686" "#CD534C" "#7AA6DC" "#003C67"
#> Olive MineShaft WellRead KashmirBlue
#> "#8F7700" "#3B3B3B" "#A73030" "#4A6990"
#>
#> $igv
#> chr1 chr2 chr3 chr4 chr5 chr6 chr7 chr8
#> "#5050FF" "#CE3D32" "#749B58" "#F0E685" "#466983" "#BA6338" "#5DB1DD" "#802268"
#> chr9 chr10 chr11 chr12 chr13 chr14 chr15 chr16
#> "#6BD76B" "#D595A7" "#924822" "#837B8D" "#C75127" "#D58F5C" "#7A65A5" "#E4AF69"
#> chr17 chr18 chr19 chr20 chr21 chr22 chrX chrY
#> "#3B1B53" "#CDDEB7" "#612A79" "#AE1F63" "#E7C76F" "#5A655E" "#CC9900" "#99CC00"
#> chrUn chr23 chr24 chr25 chr26 chr27 chr28 chr29
#> "#A9A9A9" "#CC9900" "#99CC00" "#33CC00" "#00CC33" "#00CC99" "#0099CC" "#0A47FF"
#> chr30 chr31 chr32 chr33 chr34 chr35 chr36 chr37
#> "#4775FF" "#FFC20A" "#FFD147" "#990033" "#991A00" "#996600" "#809900" "#339900"
#> chr38 chr39 chr40 chr41 chr42 chr43 chr44 chr45
#> "#00991A" "#009966" "#008099" "#003399" "#1A0099" "#660099" "#990080" "#D60047"
#> chr46 chr47 chr48
#> "#FF1463" "#00D68F" "#14FFB1"
#>
#> $uchicago
#> Maroon DarkGray Yellow LightGreen Blue Orange Red
#> "#800000" "#767676" "#FFA319" "#8A9045" "#155F83" "#C16622" "#8F3931"
#> DarkGreen Violet
#> "#58593F" "#350E20"
#>