A data subset from a synthetic cancer dataset keeping the first 100 Assays.
DAid, Assay_Warning, QC_Warning, and PlateID have been added as extra columns.
The original dataset was processed with the process_example_data script.
Format
A tibble with 56,142 rows and 10 columns:
- DAid
The Disease Atlas sample ID
- Sample
The Sample ID
- OlinkID
The Olink Assay ID
- UniProt
The UniProt Assay ID
- Assay
The Assay name
- Panel
The Olink Panel in which the Assay belongs to
- NPX
The NPX value for each Sample and Assay
- Assay_Warning
The Assay warning status for the sample
- QC_Warning
The QC warning status for the sample
- PlateID
The ID of the plate where the sample was processed
Examples
example_data
#> # A tibble: 56,142 × 10
#> DAid Sample OlinkID UniProt Assay Panel NPX Assay_Warning QC_Warning
#> <chr> <chr> <chr> <chr> <chr> <chr> <dbl> <chr> <chr>
#> 1 DA00001 AML_syn… OID213… Q9BTE6 AARS… Onco… 3.39 PASS PASS
#> 2 DA00001 AML_syn… OID212… P00519 ABL1 Onco… 2.76 PASS PASS
#> 3 DA00001 AML_syn… OID212… P09110 ACAA1 Onco… 1.71 PASS PASS
#> 4 DA00001 AML_syn… OID201… P16112 ACAN Card… 0.0333 PASS PASS
#> 5 DA00001 AML_syn… OID201… Q9BYF1 ACE2 Card… 1.76 PASS PASS
#> 6 DA00001 AML_syn… OID201… Q15067 ACOX1 Card… -0.919 PASS PASS
#> 7 DA00001 AML_syn… OID203… P13686 ACP5 Card… 1.54 PASS PASS
#> 8 DA00001 AML_syn… OID214… Q9NPH0 ACP6 Onco… 2.15 PASS PASS
#> 9 DA00001 AML_syn… OID200… P62736 ACTA2 Card… 2.81 PASS PASS
#> 10 DA00001 AML_syn… OID204… O43707 ACTN4 Infl… 0.742 PASS PASS
#> # ℹ 56,132 more rows
#> # ℹ 1 more variable: PlateID <chr>